I went ahead and took out the new BCR I had installed and just push a fresh new battery in the engine, did a factory reset and had the same result. I also tested just shutting off the track power with the engine running with both the new battery in it and also with the BCR. The engine continued to run for 7-8 seconds before shutting down. So with that said I am guessing its something more than just the battery?
Very frustrating having a $800+ engine with less than 15 minutes of run time not function anymore properly!