I'm not sure how it would be a wiring issue if you just plugged in the PS32 board, I'd have to believe it's related to the sound and/or chain files. Specifically, which sound and chain files did you load. Where did you get the "recommended chain file list"? Did you try installing the upgrade file from the original locomotive product page? If you installed a later sound file, it could be that the later products remapped the lights to different outputs.
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