I'm going to guess that your SW9 is one of the very early models, made in Y2K or before. This was Atlas' first venture into 3-rail O gauge.
When Atlas learned of 3-railers' appetite for spending big money on command control and gimmicky features, they scrambled their brains trying to figure out how to fit the necessary electronics into the tiny SW9 with its excellent HO-style cassette drive. Not easy, but eventually they succeeded. However in order to do it, they modified the frame. I don't know what the exact modifications were, but apparently it was more than what amateur hobbyists could be expected to do for a home upgrade.
Just the same, they didn't want to leave those who purchased the original batch of conventional units behind. So they offered a frame swap / frame re-machining service for a limited time. And that time was up years ago. So if you have a conventional model with an unmodified frame, you probably won't be able to install OEM electronics in the OEM configuration.
You MIGHT be able to install the smallest ERR command board with no sound. Especially if you're willing to sacrifice the cab detail. The stock speaker was nothing to brag about. I'm not sure what the handrails are made of, or whether they're insulated on early conventional units. That's an important question, because getting a TMCC antenna to work inside the die-cast cab is going to be another challenge. I have one of these early units, and it's still conventional, but I'm mostly a steam guy these days. Good luck!!